BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB017A02LP1|AL427095
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig937 836 0.0
3x_Contig1789 580 e-165
>3x_Contig937
Length = 3082
Score = 836 bits (421), Expect = 0.0
Identities = 437/441 (99%), Gaps = 2/441 (0%)
Strand = Plus / Minus
Query: 529 atgatatatgtmata-ttagaaaatggtattatgtacaagtgataacganagggggagaa 587
||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3072 atgatatatgtaatanttagaaaatggtattatgtacaagtgataacga-agggggagaa 3014
Query: 588 agtctgtctgcttctttctaatcatgagattttccaccaactctatcgtacaatctagca 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3013 agtctgtctgcttctttctaatcatgagattttccaccaactctatcgtacaatctagca 2954
Query: 648 gcatgatagttgatattactcttctggactttttggttcttacctaaggcattttccgcg 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2953 gcatgatagttgatattactcttctggactttttggttcttacctaaggcattttccgcg 2894
Query: 708 gtacatgccttcaaatcttgggccaatgtctcacatgcaccgtacatgtgtccgttagaa 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2893 gtacatgccttcaaatcttgggccaatgtctcacatgcaccgtacatgtgtccgttagaa 2834
Query: 768 gaccagcattgtaatagattggacatcaataccaagcatctgttagcctcttgttgaata 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2833 gaccagcattgtaatagattggacatcaataccaagcatctgttagcctcttgttgaata 2774
Query: 828 attggctttttcaccttaagtctgggaagaggtggtaatttataaagaggagtcttactg 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2773 attggctttttcaccttaagtctgggaagaggtggtaatttataaagaggagtcttactg 2714
Query: 888 gacatgctttaatatatgaacacttgatatcttggacgtacccttcgcaacacgacctta 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2713 gacatgctttaatatatgaacacttgatatcttggacgtacccttcgcaacacgacctta 2654
Query: 948 caagacctctagaacggrcta 968
||||||||||||||||| |||
Sbjct: 2653 caagacctctagaacggacta 2633
>3x_Contig1789
Length = 30977
Score = 580 bits (292), Expect = e-165
Identities = 302/304 (99%), Gaps = 1/304 (0%)
Strand = Plus / Plus
Query: 1 aatagtaatcggcattagacacacagatccatttggggagacgttgcaaccaattcaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30674 aatagtaatcggcattagacacacagatccatttggggagacgttgcaaccaattcaaaa 30733
Query: 61 gacggaccccatttggccccagttctacaggttgcaaccgttgctacattggaatctctc 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30734 gacggaccccagttggccccagttctacaggttgcaaccgttgctacattggaatctctc 30793
Query: 121 acagatatggagtttcctattgtattcgggagaagaagtatgcggattatatgagatggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30794 acagatatggagtttcctattgtattcgggagaagaagtatgcggattatatgagatggg 30853
Query: 181 attcacttcattgggcagtgtaaacaacacattgagaaatccatacctacggataccag- 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30854 attcacttcattgggcagtgtaaacaacacattgagaaatccatacctacggataccaga 30913
Query: 240 aacctataggctccatgacaaaggccgagactgaacatagcgatttccaatgggaaattg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30914 aacctataggctccatgacaaaggccgagactgaacatagcgatttccaatgggaaattg 30973
Query: 300 aaaa 303
||||
Sbjct: 30974 aaaa 30977
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6215
Number of Sequences: 1807
Number of extensions: 6215
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 2
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)